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PyFilesystem2 AnVIL plugin

A plugin for representing AnVIL resources in Python environments as a file system; particularly, in an AnVIL-launched Galaxy instances.

Galaxy installation requirements:

  • file_sources_conf.yml in the Galaxy config directory with an AnVIL entry:
- doc: <whatever you would like to call it>
  id: <root folder name>
  namespace: <your google billing project == Terra namespace >
  type: anvil
  workspace: <name of the Terra workspace you wish to browse>
  api_url: <OPTIONAL - if not specified default production url will be used>
  on_anvil: <OPTIONAL - (true/false) must be true to manage AnVIL workload identity scopes>
  drs_url: <OPTIONAL - if not specified  default production url will be used>
  writable: <OPTIONAL - (true/false) if not specified plugin will be read-only>

NOTES:

  • doc and id can be any string you choose but type MUST be anvil
  • for off-AnVIL use, Galaxy and Data Fetch tools require the following environment variables:
    • GOOGLE_APPLICATION_CREDENTIALS="<path to credentials json>"
    • TERRA_NOTEBOOK_GOOGLE_ACCESS_TOKEN="$(gcloud auth print-access-token)"

Dependencies:

Releasing:

  • Pushing a version tag such as 0.2.7 builds the sdist and wheel and publishes them to PyPI via the Release GitHub Actions workflow. Nothing else publishes; there is no manual upload step.
  • The tag must equal __version__ in anvilfs/__about__.py or the workflow fails before building, so bump the version and merge it first, then tag the merge commit:
    git checkout dev && git pull
    git tag 0.2.7 && git push origin 0.2.7
    
  • Only bare N.N.N tags trigger a release.
  • Uploads use PyPI trusted publishing, so no API token is stored in the repository.

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Source Distribution

fs_anvilfs-0.2.9.tar.gz (22.2 kB view details)

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fs_anvilfs-0.2.9-py3-none-any.whl (23.1 kB view details)

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File metadata

  • Download URL: fs_anvilfs-0.2.9.tar.gz
  • Upload date:
  • Size: 22.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/7.0.0 CPython/3.13.14

File hashes

Hashes for fs_anvilfs-0.2.9.tar.gz
Algorithm Hash digest
SHA256 fb08b295fc62a381a2149269c0d7f91d5fd68c0457b25bdacfb18b908bc98170
MD5 321edc8b20ebbabd16e199a3f8355b38
BLAKE2b-256 2f68627fcd6e1cc3bade6e01806c84259061fe115b2da5e64ff146066f834ec1

See more details on using hashes here.

Provenance

The following attestation bundles were made for fs_anvilfs-0.2.9.tar.gz:

Publisher: release.yml on anvilproject/fs.anvilfs

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file fs_anvilfs-0.2.9-py3-none-any.whl.

File metadata

  • Download URL: fs_anvilfs-0.2.9-py3-none-any.whl
  • Upload date:
  • Size: 23.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/7.0.0 CPython/3.13.14

File hashes

Hashes for fs_anvilfs-0.2.9-py3-none-any.whl
Algorithm Hash digest
SHA256 c2d9abb6737689674db571431f44411b57876b199460176a16b56e57e0b64840
MD5 db0879df78d67cb70776c0b89a0a3a36
BLAKE2b-256 f8f2062690a81c04448fc06c8e72fa91c6332df52f9436f19da8f21cb3906fbc

See more details on using hashes here.

Provenance

The following attestation bundles were made for fs_anvilfs-0.2.9-py3-none-any.whl:

Publisher: release.yml on anvilproject/fs.anvilfs

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Release history Release notifications | RSS feed

0.2.10

2 files

This release

0.2.9 This release

2 files

0.2.8

2 files

0.2.7

2 files

0.2.5

2 files

0.2.4

2 files

0.2.3

2 files

0.2.2

2 files

0.2.1

2 files

0.2.0

2 files

0.1.2

2 files

0.1.1

2 files

0.0.45

2 files

0.0.44

2 files

0.0.43

2 files

0.0.4

1 file

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