GenePattern Python Library
This is a Python library for working with GenePattern programmatically. Behind the scenes, calls from this library execute the GenePattern REST API.
Supported Python Versions
This library requires Python 3.6+. The bundled data submodule gp.data also requires pandas, although the rest of the module does not.
Python 2 Support: Support for Python 2 was removed in version 1.4.0. Python 2 users should use version 1.3.1.
Installing
It is recommended to install this library from PIP. Simply execute the command below:
pip install genepattern-python
Upgrading
To upgrade to the latest version of the library, execute the command below:
pip install genepattern-python --upgrade
Tutorial
A tutorial on how to use the GenePattern Python Library is available here.
"Connection Reset by Peer" Error
Connecting to the GenePattern public server now requires TLS 1.2+. Older versions of SSL and TLS will no longer work. If you're attempting to connect and receiving a "Connection Reset by Peer" error, you will need to update the OpenSSL library associated with your Python installation.
Release files for genepattern-python 24.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| genepattern-python-24.1.tar.gz | 20.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| genepattern_python-24.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 41.9 kB
Release files / genepattern-python-24.1.tar.gz
| Download URL | genepattern-python-24.1.tar.gz |
|---|---|
| Size | 20.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
e37b3f2787f8dbfbeea422229a115d5d6a691454f7f750fd582b479e31c87bda
|
|
BLAKE2b-256 checksum How to use checksums |
d802835eaf10b9b755e0757f383ef4fae83803eb1c07f36f8bb30a6627c692dc
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.7
|
Release files / genepattern_python-24.1-py3-none-any.whl
| Download URL | genepattern_python-24.1-py3-none-any.whl |
|---|---|
| Size | 21.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
c6d0c7e673a02456f8f8bc8dc3929710ce5089499ad890d959a63a955793f5fe
|
|
BLAKE2b-256 checksum How to use checksums |
f48c74dd237d3e446204b94a35e38cfc375b6336cde71166e21533a6ab06b526
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.7
|
