gOSh - gOS sHell: A CLI tool for the nf-gOS pipeline
Project description
gOSh
A CLI for the nf-gOS pipeline.
Quickstart
gosh run pipelineto run the nf-gos pipeline (make sure to provide a samplesheet)gosh run skiliftto convert the pipeline outputs into something ingestible by the gOS frontend- (optional)
gosh run outputs -p [pipeline results directory] -s [samplesheet path]to generate a csv containing your outputs. This is automatically done when you rungosh run skiliftwith a pipeline directory
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
gosh_cli-0.1.7.tar.gz
(29.5 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
gosh_cli-0.1.7-py3-none-any.whl
(33.0 kB
view details)
File details
Details for the file gosh_cli-0.1.7.tar.gz.
File metadata
- Download URL: gosh_cli-0.1.7.tar.gz
- Upload date:
- Size: 29.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.9.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
db859a5758c39ab7661d2f41ae20f2dc82eca300b2e1f680943d68406cba6e9e
|
|
| MD5 |
d2e754f41c0bca608efaefc42ef899b3
|
|
| BLAKE2b-256 |
0700755c4106248e2495a39b042f09e30ef4cf1cfab0f92cd3f9341ea41a54c9
|
File details
Details for the file gosh_cli-0.1.7-py3-none-any.whl.
File metadata
- Download URL: gosh_cli-0.1.7-py3-none-any.whl
- Upload date:
- Size: 33.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.9.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
0f92a47008df5afdf818c4f7a1b1853d6f09b386ebe44cfae458e625d8eb8ff4
|
|
| MD5 |
3e16cfd64091ba0b5352220291589af8
|
|
| BLAKE2b-256 |
d0be50d866e6427876ad8f6e7002ed9069d3e769a766f20548128bf3ab3972bb
|
