gOSh - gOS sHell: A CLI tool for the nf-gOS pipeline
Project description
gOSh
A CLI for the nf-gOS pipeline.
Quickstart
gosh run pipelineto run the nf-gos pipeline (make sure to provide a samplesheet)gosh run skiliftto convert the pipeline outputs into something ingestible by the gOS frontend- (optional)
gosh run outputs -p [pipeline results directory] -s [samplesheet path]to generate a csv containing your outputs. This is automatically done when you rungosh run skiliftwith a pipeline directory
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
gosh_cli-0.1.9.tar.gz
(30.4 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
gosh_cli-0.1.9-py3-none-any.whl
(34.0 kB
view details)
File details
Details for the file gosh_cli-0.1.9.tar.gz.
File metadata
- Download URL: gosh_cli-0.1.9.tar.gz
- Upload date:
- Size: 30.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.9.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
83ebb175504927e1c5c0baa323ae680f2419d74d7c9709e4e0c387f80d68c7cc
|
|
| MD5 |
554a23afe7dff7314baccc8c1a684167
|
|
| BLAKE2b-256 |
252223e9d97d7223d581945b342b5dd30e0daf432d338aeddb57f1913ad03fd9
|
File details
Details for the file gosh_cli-0.1.9-py3-none-any.whl.
File metadata
- Download URL: gosh_cli-0.1.9-py3-none-any.whl
- Upload date:
- Size: 34.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.9.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
703219cfb22b976e708367e5aa045ddf2eb3b4ccfda7e9cb46d27091161ac93f
|
|
| MD5 |
a5ae2ed7297e3c1aee342440dc78ca96
|
|
| BLAKE2b-256 |
74c615f55b9612f1608c71b14199b5e6811e6d1f0a844e33f4a416888214061e
|
