python adapter for interacting with the GraphKB API
Project description
GraphKB (Python)
This repository is part of the platform for oncogenomic reporting and interpretation.
Python adapter package for querying the GraphKB API. See the user manual
Getting Started
Install (For developers)
clone this repository
git clone https://github.com/bcgsc/pori_graphkb_python
cd pori_graphkb_python
create a virtual environment
python3 -m venv venv
source venv/bin/activate
install the package and its development dependencies
pip install -U pip setuptools
pip install -e .[dev]
Run Tests
pytest tests
Generating the Documentation
User documentation for this repository is hosted in the central PORI repository
Deployment (Publishing)
Install the deployment dependencies
pip install .[deploy]
Build the distribution files
python setup.py install sdist bdist_wheel
Upload the distibutions to the package server (-r is defined in your pypirc)
twine upload -r bcgsc dist/*
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