IMAXT multiscale napari plugin
A napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.
Installation
You can install imaxt-multiscale-plugin via pip:
pip install imaxt-multiscale-plugin
Usage
Run napari with the name of the sample to visualize either a local path:
napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um
or a sample in S3 storage:
napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um
Screenshots
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the GNU LGPL v3.0 license, "imaxt-multiscale-plugin" is free and open source software
Issues
If you encounter any problems, please [file an issue] along with a detailed description.
1 maintainer
Metadata
1 maintainer
Release files for imaxt-multiscale-plugin 0.3.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
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| imaxt-multiscale-plugin-0.3.1.tar.gz | 12.0 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| imaxt_multiscale_plugin-0.3.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 26.2 kB
Release files / imaxt-multiscale-plugin-0.3.1.tar.gz
| Download URL | imaxt-multiscale-plugin-0.3.1.tar.gz |
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| Size | 12.0 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / imaxt_multiscale_plugin-0.3.1-py3-none-any.whl
| Download URL | imaxt_multiscale_plugin-0.3.1-py3-none-any.whl |
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| Size | 14.2 kB |
| Tags | Python 3 |
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