A simple plugin to use with napari
Project description
IMAXT multiscale napari plugin
A napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.
Installation
You can install imaxt-multiscale-plugin via pip:
pip install imaxt-multiscale-plugin
Usage
Run napari with the name of the sample to visualize either a local path:
napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um
or a sample in S3 storage:
napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um
Screenshots
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the GNU LGPL v3.0 license, "imaxt-multiscale-plugin" is free and open source software
Issues
If you encounter any problems, please [file an issue] along with a detailed description.
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