tools for finding an optimal kmer
Project description
# Kitsune Kitsune is a toolkit for evaluate the lenght of optimal k-mer in dataset.
## Basics Kitsune provides many methods to evaluate the amount of information by given k-mer. This quantitative measurement could be use to calculate the amount of need k-mer
## Installation Clone the repository and install it throught pip ` pip install kitsune `
## Usage
### Calculate k-mer from CRE, ACF, and OFC value Kitsune provides three commands for calculate an appropiate k-mer using CRE, ACF, and OCF.
` kitsune cre genome_fasta/* -ks 5 -ke 10 kitsune acf genome_fasta/* -ks 5 -ke 10 kitsune ocf genome_fasta/* -ks 5 -ke 10 `
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