libsbgnpy: python library for SBGN
libsbgnpy is a python library to work with the Systems Biology Graphical Notation (SBGN). It provides the python bindings of the SBGN-ML schema, generated with xsdata, and reads, writes, validates and renders SBGN documents.
from pathlib import Path
from libsbgnpy import read_sbgn_from_file, render_sbgn
sbgn = read_sbgn_from_file(Path("map.sbgn"))
render_sbgn(sbgn, Path("map.png"))
Installation
pip install libsbgnpy
Documentation
The documentation is at matthiaskoenig.github.io/libsbgnpy:
- Installation
- SBGN maps — the object model
- Reading and writing, notes and extensions, render information, validation, images
- API reference
- Contributing
Runnable examples are in examples/, the release notes in release-notes/.
How to cite
If you use libsbgnpy please cite the archived software on Zenodo, see CITATION.cff.
License
- Source Code: MIT
- Documentation: CC BY-SA 4.0
Funding
Matthias König (MK) was supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054). MK is supported by the Federal Ministry of Education and Research (BMBF, Germany) within ATLAS by grant number 031L0304B and by the German Research Foundation (DFG) within the Research Unit Program FOR 5151 QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach) by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).
© 2016-2026 Matthias König
1 maintainer
Metadata
1 maintainer
Release files for libsbgnpy 0.6.0
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Source distribution (sdist)
| File | Size | Uploaded | |
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| libsbgnpy-0.6.0.tar.gz | 8.7 MB | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| libsbgnpy-0.6.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 8.8 MB
Release files / libsbgnpy-0.6.0.tar.gz
| Download URL | libsbgnpy-0.6.0.tar.gz |
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| Size | 8.7 MB |
| Tags | Source |
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