Maphelios
Package to find and plot inserts alongside the genome or contigs.
BLAST is required. You can follow the instructions to download and install BLAST here.
Installation
pip install git+https://git.embl.org/grp-zimmermann-kogadeeva/Maphelios.git
Running
Docker
To run the streamlit app with docker:
docker run -it --rm -p 8501:8501 docker://registry.git.embl.org/grp-zimmermann-kogadeeva/maphelios:0.7.3
Apptainer
To run the streamlit app with apptainer:
apptainer exec --no-home --writable-tmpfs --workdir /app docker://registry.git.embl.org/grp-zimmermann-kogadeeva/maphelios:0.7.3 streamlit run /app/app/app.py --server.headless true
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