Marsilea: Declarative creation of composable visualization!
Documentation
You can read the documentation on Read the Docs.
Installation
Using PIP
pip install marsilea
Using Conda/Mamba
conda install -c conda-forge marsilea
# or
mamba install -c conda-forge marsilea
Claude skill
/plugin marketplace add Marsilea-viz/marsilea-skill
/plugin install marsilea@marsilea-marketplace
Once installed, the skill activates automatically whenever you ask Claude for a composable visualization. Marsilea itself still needs to be installed in your Python environment (see above). See the marsilea-skill repository for details.
What is Composable Visualization?
When we do visualization, we often need to combine multiple plots to show different aspects of the data. For example, we may need to create a heatmap to show the expression of genes in different cells, and then create a bar chart to show the expression of genes in different cell types. A visualization contains multiple plots is called a composable visualization. In Marsilea, we employ a declarative approach for user to create composable visualization incrementally.
Citation
If you use Marsilea in your research, please cite the following:
Marsilea: an intuitive generalized paradigm for composable visualizations
Yimin Zheng, Zhihang Zheng, André F. Rendeiro & Edwin Cheung
Genome Biology 2025 Jan 06. DOI: 10.1186/s13059-024-03469-3
Get helps
- Open an issue
- Join us on Gitter
Examples
| Bar Chart With Image | Stacked Bar | Arc Diagram |
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| Heatmap | Oncoprint | Upsetplot |
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1 maintainer
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