META EDC
Metformin treatment in Africa - META
py 3.12+ / DJ 5.2 using the Clinic EDC framework
This codebase is used for two randomized clinical trials:
META PHASE II:
(final version 0.1.77)
Metformin Treatment for Diabetes Prevention in Africa: META Trial TASO, MRC/UVRI/LSHTM, NIMR – TZ and Liverpool School of Tropical Medicine (ISRCTN76157257) http://www.isrctn.com/ISRCTN76157257
META PHASE III:
A randomised placebo-controlled double-blind phase III trial to determine the effects of metformin versus placebo on the incidence of diabetes in HIV-infected persons with pre-diabetes in Tanzania.
Liverpool School of Tropical Medicine
EDCTP grant number: RIA2018CO-2513
Trial registration: ISCRTN 77382043
https://ico.org.uk/ESDWebPages/Entry/Z4763134
See also https://github.com/clinicedc/edc
Installation
As of version 1.1.10, we are building and deploying with uv.
Here we assume you have your DB setup and already have your .env file.
First-time install
Assuming you are logged into the account myaccount:
mkdir -p ~/.etc/meta && \
mkdir ~/edc && \
cd ~/edc && \
uv venv && \
uv pip install -U meta-edc==3.10.2 && \
wget https://raw.githubusercontent.com/meta-trial/meta-edc/3.10.2/manage.py && \
uv pip freeze | grep meta-edcCopy your .env file to ~/.etc.
Place this at or near the end of your .bashrc:
# >>> EDC using uv >>>
export DJANGO_SETTINGS_MODULE=meta_edc.settings.uat
export META_PHASE=3
export DJANGO_BASE_DIR=/home/myaccount/edc
export DJANGO_ENV_DIR=/home/myaccount/.etc/
cd ~/edc
source .venv/bin/activate
export PATH="/home/myaccount/edc:$PATH"
# <<< EDC using uv <<<Source .bashrc and run manage.py check.
source ~/.bashrc && \
cd ~/edc && \
python manage.py checkIf all is OK, run migrate:
Explicitly specify the settings file when using migrate.
live: --settings=meta_edc.settings.live
uat: --settings=meta_edc.settings.uat
debug: --settings=meta_edc.settings.debug
cd ~/edc && \
python manage.py migrate --settings=meta_edc.settings.liveUpdate an existing install
From the above example:
cd ~/edc && \
uv venv --clear && \
uv pip install -U meta-edc==3.10.2 && \
wget -O manage.py https://raw.githubusercontent.com/meta-trial/meta-edc/1.1.10/manage.py && \
uv pip freeze | grep meta-edc && \
python manage.py checkIf all is OK, run migrate
cd ~/edc && \
python manage.py migrate --settings=meta_edc.settings.live2 maintainers
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