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Project description

mfeprimer-py3

Python3 version of command line scripts of MFEprimer-2.0

Installation

Using pip:

pip install mfeprimer-py3

Using git (optional):

git clone https://github.com/Ulises-Rosas/mfeprimer-py3.git
cd mfeprimer-py3
python3 setup.py install

Usage

# Index the database
IndexDb.py test/test.rna
# Run MFEprimer
MFEprimer.py -i test/p.fa -d test/test.rna

Check original repo (https://github.com/quwubin/MFEprimer-2.0) for further details about features, outcomes and license agreement.

Citations

  • Wubin Qu, Yang Zhou, Yanchun Zhang, Yiming Lu, Xiaolei Wang, Dongsheng Zhao, Yi Yang and Chenggang Zhang*. MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity. Nucleic Acids Res. 2012 (accepted).

  • Wubin Qu, Zhiyong Shen, Dongsheng Zhao, Yi Yang and Chenggang Zhang. (2009) MFEprimer: multiple factor evaluation of the specificity of PCR primers, Bioinformatics, 25(2), 276-278.

Project details


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Files for mfeprimer-py3, version 0.1.1
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Filename, size mfeprimer_py3-0.1.1-py3-none-any.whl (756.4 kB) File type Wheel Python version py3 Upload date Hashes View hashes
Filename, size mfeprimer-py3-0.1.1.tar.gz (738.6 kB) File type Source Python version None Upload date Hashes View hashes

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