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Project description
mfeprimer-py3
Python3 version of command line scripts of MFEprimer-2.0
Installation
Using git:
git clone https://github.com/Ulises-Rosas/mfeprimer-py3.git
cd mfeprimer-py3
python3 setup.py install
Usage
# Index the database IndexDb.py test/test.rna # Run MFEprimer MFEprimer.py -i test/p.fa -d test/test.rna
Check original repo (https://github.com/quwubin/MFEprimer-2.0) for further detail about features, outcomes and license agreement.
Citations
-
Wubin Qu, Yang Zhou, Yanchun Zhang, Yiming Lu, Xiaolei Wang, Dongsheng Zhao, Yi Yang and Chenggang Zhang*. MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity. Nucleic Acids Res. 2012 (accepted).
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Wubin Qu, Zhiyong Shen, Dongsheng Zhao, Yi Yang and Chenggang Zhang. (2009) MFEprimer: multiple factor evaluation of the specificity of PCR primers, Bioinformatics, 25(2), 276-278.
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| Filename, size | File type | Python version | Upload date | Hashes |
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| Filename, size mfeprimer_py3-0.1-py3-none-any.whl (756.3 kB) | File type Wheel | Python version py3 | Upload date | Hashes View hashes |
| Filename, size mfeprimer-py3-0.1.tar.gz (738.5 kB) | File type Source | Python version None | Upload date | Hashes View hashes |
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