MoSeq2-model

Installation

pip install moseq2-model

Python 3.10 or newer, on Linux. macOS and Windows support is being verified.

Most people install the whole pipeline in one step with pip install moseq2-app, which brings this package with it. See the installation guide.

Documentation: MoSeq2 Wiki

You can find more information about MoSeq Pipeline, installation, step-by-step instructions, documentation for Command Line Interface(CLI), tutorials etc in MoSeq2 Wiki.

You can run moseq2-model --version to check the current version and moseq2-model --help to see all the commands.

Usage: moseq2-model [OPTIONS] COMMAND [ARGS]...

Options:
  --version  Show the version and exit.  [default: False]
  --help     Show this message and exit.  [default: False]

Commands:
  count-frames  Counts number of frames in given h5 file (pca_scores)
  kappa-scan    Batch fit multiple models scanning over different syllable...
  learn-model   Trains ARHMM on PCA Scores with given training parameters

Community Support and Contributing

• Please join to post questions and interactive with MoSeq developers and users.
• If you encounter bugs, errors or issues, please submit a Bug report here. We encourage you to check out the troubleshooting and tips section and search your issues in the existing issues first.
• If you want to see certain features in MoSeq or you have new ideas, please submit a Feature request here.
• If you want to contribute to our codebases, please check out our Developer Guidelines.
• Please tell us what you think by filling out this user survey.

License

MoSeq is freely available for academic use under a license provided by Harvard University. Please refer to the license file for details. If you are interested in using MoSeq for commercial purposes please contact Bob Datta directly at srdatta@hms.harvard.edu, who will put you in touch with the appropriate people in the Harvard Technology Transfer office.