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MoSeq2-model

codecov DOI

Installation

moseq2-model is one package of the MoSeq2 pipeline. Install the whole pipeline:

python -m pip install moseq2-app

You need Python 3.10 or newer on your system. The installation guide carries the whole procedure, including the notebooks.

To install this package on its own: python -m pip install moseq2-model.

Documentation: MoSeq2 Wiki

You can find more information about MoSeq Pipeline, installation, step-by-step instructions, documentation for Command Line Interface(CLI), tutorials etc in MoSeq2 Wiki.

You can run moseq2-model --version to check the current version and moseq2-model --help to see all the commands.

Usage: moseq2-model [OPTIONS] COMMAND [ARGS]...

Options:
  --version  Show the version and exit.  [default: False]
  --help     Show this message and exit.  [default: False]

Commands:
  count-frames  Counts number of frames in given h5 file (pca_scores)
  kappa-scan    Batch fit multiple models scanning over different syllable...
  learn-model   Trains ARHMM on PCA Scores with given training parameters

Community Support and Contributing

  • Please join MoSeq Slack Channel to post questions and interactive with MoSeq developers and users.
  • If you encounter bugs, errors or issues, please submit a Bug report here. We encourage you to check out the troubleshooting and tips section and search your issues in the existing issues first.
  • If you want to see certain features in MoSeq or you have new ideas, please submit a Feature request here.
  • If you want to contribute to our codebases, please check out our Developer Guidelines.
  • Please tell us what you think by filling out this user survey.

License

MoSeq is freely available for academic use under a license provided by Harvard University. Please refer to the license file for details. If you are interested in using MoSeq for commercial purposes please contact Bob Datta directly at srdatta@hms.harvard.edu, who will put you in touch with the appropriate people in the Harvard Technology Transfer office.

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