File IO with itk for napari
Project description
napari-itk-io
Image metadata, e.g. the pixel spacing, origin, and metadata tags, are preserved and passed into napari.
Supported image file formats:
- BioRad
- BMP
- DICOM
- DICOM Series
- ITK HDF5
- JPEG
- GE4,GE5,GEAdw
- Gipl (Guys Image Processing Lab)
- LSM
- MetaImage
- MINC 2.0
- MGH
- MRC
- NifTi
- NRRD
- Portable Network Graphics (PNG)
- Tagged Image File Format (TIFF)
- VTK legacy file format for images
For DICOM Series, select the folder containing the series with File -> Open Folder.... The first series will be selected and sorted spatially.
Installation
You can install napari-itk-io via pip:
pip install napari-itk-io
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Follow the itk contributing guidelines and the itk code of conduct.
License
Distributed under the terms of the Apache Software License 2.0 license, "napari-itk-io" is free and open source software.
Issues
If you encounter any problems, please file an issue along with a detailed description.
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