napari-J
A plugin to exchange data with FIJI and to use FIJI image analysis from napari. Current features are:
- get the active image from FIJI
- send a screenshot to FIJI
- get a set of points from the FIJI results table
- filter the points in napari
- send the filtered points back to FIJI
Known problems:
- Crashes on linux when the file-dialog is opened. Workaround: Set the option
Use JFileChooser to open/savefrom theEdit>Options>Input/Outputmenu. - 03.05.2022 - Currently you need to have the range of the quality values for point between 0 and 255, in the new version they can have any range, but we are waiting for the bug in napari 0.4.15 to be fixed to release this.
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-J via pip:
pip install napari-J
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license, "napari-J" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
2 maintainers
Metadata
2 maintainers
Release files for napari-J 0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari-J-0.3.tar.gz | 54.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_J-0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 74.4 kB
Release files / napari-J-0.3.tar.gz
| Download URL | napari-J-0.3.tar.gz |
|---|---|
| Size | 54.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.2
|
Release files / napari_J-0.3-py3-none-any.whl
| Download URL | napari_J-0.3-py3-none-any.whl |
|---|---|
| Size | 20.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
88f1fe0e14b0639ab046fa7d6cfd49e491309e0233b42e3b1cf1fd7b2e13be63
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|
BLAKE2b-256 checksum How to use checksums |
44f49edb71481dad1ee9ece9bdc9ae11f5f05c912be8e39968466a94d9516f3c
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.2
|
