7 projects
napari-bacteria-density
A Napari plugin to measure the density of bacteria vs the distance within tubular organs
napari-unet
A Napari plugin allowing to train and run inference of a UNet model.
set-calibration
A tool allowing to modify the calibration (physical units) of images
napari-bigfish
A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images.
segment-embryo
3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
spots-in-yeasts
A Napari plugin segmenting yeast cells and fluo spots to extract statistics.
napari-J
A plugin to exchange data with FIJI and to use FIJI image analysis from napari
