napari-omero-downloader-cci 0.1.5

A plugin that allows napari to connect to the Omero CCI server to visualize and download image data

napari-omero-downloader-cci

A plugin that allows napari to connect to the Omero CCI server to visualize and download image data

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This napari plugin was generated with copier using the napari-plugin-template (None).

Installation

First napari installation

First install miniconda from conda forge: [https://conda-forge.org/download/].

Recommanded, create an environment for napari, bundling both napari and omero

conda create -n napari -c conda-forge napari omero-py pyqt pyside2 --yes
conda activate napari
napari

Already python installed napari

In this case, activate your environment and install Omero:

conda install -c conda-forge omero-py --yes

Plugin installation

You can install napari-omero-downloader-cci via pip:

pip install napari-omero-downloader-cci

To install latest development version :

pip install git+https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci.git

—or, during development—

pip install -e .

Running the plugin after Installation

You will need to open the conda-forge preogram, then:

conda activate napari
napari

The plug will be in the plugin tab.

Warning about standalone napari

A standalone version of napari is available, and the plugin will be available on the napari hub. However, installation through the standalone app is not recommanded, since it relies on pip which does not distribute system ready dependancy for Ice.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-omero-downloader-cci" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.