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Plot intensity along a line in napari

Project description

napari-plot-profile

License PyPI Python Version tests codecov

Plot intensities along a line in napari.

img.png

Usage

  • Open some images in napari.

  • Add a shapes layer.

img.png

  • Activate the line drawing tool or the path tool and draw a line.

img.png

  • After drawing a line, click on the menu Plugins > Measurements (Plot Profile)
  • If you modify the line, you may want to click the "Refresh" button to redraw the profile.

img.png

To see how these steps can be done programmatically from python, check out the demo notebook


This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-plot-profile via pip:

pip install napari-plot-profile

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-plot-profile" is free and open source software

Issues

If you encounter any problems, please create a thread on image.sc along with a detailed description and tag @haesleinhuepf.

Project details


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Files for napari-plot-profile, version 0.2.0
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Filename, size napari_plot_profile-0.2.0-py3-none-any.whl (8.1 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size napari-plot-profile-0.2.0.tar.gz (7.8 kB) File type Source Python version None Upload date Hashes View

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