napari-segselect
Select a connected component from a membrain-seg segmentation.
Usage
- Run
membrain-segwith the--store-connected-componentsflag (optional, otherwise connected components will be calculated while opening) - Open the segmentation in Napari, find out which component numbers correspond to your feature.
- Enter these numbers and a feature name in the widget, press run.
- Save the resulting layer using naparis built-in dialog.
- Now you have a standalone binary segmentation of your feature of interest.
Installation
You can install napari-segselect via pip:
pip install napari-segselect
Or directly from GitHub:
pip install git+https://github.com/bwmr/napari-segselect.git
License
Distributed under the terms of the BSD-3 license, "napari-segselect" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
This napari plugin was generated with copier using the napari-plugin-template.
1 maintainer
Metadata
1 maintainer
Release files for napari-segselect 0.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari_segselect-0.1.3.tar.gz | 9.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_segselect-0.1.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 18.2 kB
Release files / napari_segselect-0.1.3.tar.gz
| Download URL | napari_segselect-0.1.3.tar.gz |
|---|---|
| Size | 9.1 kB |
| Tags | Source |
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Release files / napari_segselect-0.1.3-py3-none-any.whl
| Download URL | napari_segselect-0.1.3-py3-none-any.whl |
|---|---|
| Size | 9.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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