napari-segselect 0.1.1

Select a connected component from a membrain-seg segmentation.

napari-segselect

Select a connected component from a membrain-seg segmentation.

Usage

1. Run membrain-seg with the --store-connected-components flag.
2. Open the segmentation in Napari, find out which component numbers correspond to your feature.
3. Enter these numbers and a feature name in the widget, press run.
4. Save the resulting layer using naparis built-in dialog.
5. Now you have a standalone binary segmentation of your feature of interest.

Installation

You can install napari-segselect via pip:

`pip install napari-segselect`

Or directly from GitHub:

`pip install git+https://github.com/bwmr/napari-segselect.git`

License

Distributed under the terms of the BSD-3 license, "napari-segselect" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

This napari plugin was generated with copier using the napari-plugin-template.