napari-trackastra
A napari plugin for cell tracking with trackastra.
Installation
-
Please install napari as outlined here.
-
After that, install the latest version of this plugin from PyPI with:
pip install napari-trackastra
Notes:
- For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main
trackastrapackage. - On Windows currently only supported for Python 3.10.
Usage
trackastraexpects a timeseries of raw images and corresponding segmentations masks as input.- We provide some demo data at
File > Open Sample > trackastra. - Tracked cells can be directly saved in
- Results can be drag-and-dropped back into napari for inspection.
2 maintainers
Metadata
2 maintainers
Release files for napari-trackastra 0.2.2
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| napari_trackastra-0.2.2.tar.gz | 61.8 kB | Without provenance | Details for napari_trackastra-0.2.2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| napari_trackastra-0.2.2-py3-none-any.whl | Python 3 | none | any | Details for napari_trackastra-0.2.2-py3-none-any.whl |
Total release size: 119.1 kB
Release files / napari_trackastra-0.2.2.tar.gz
| Download URL | napari_trackastra-0.2.2.tar.gz |
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| Size | 61.8 kB |
| Tags | Source |
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Release files / napari_trackastra-0.2.2-py3-none-any.whl
| Download URL | napari_trackastra-0.2.2-py3-none-any.whl |
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| Size | 57.3 kB |
| Tags | Python 3 |
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Security for napari-trackastra 0.2.2
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