Napari plugin for cell tracking with trackastra.
Project description
napari-trackastra
A napari plugin for cell tracking with trackastra.
Installation
-
Please install napari as outlined here.
-
After that, install the latest version of this plugin from PyPI with:
pip install napari-trackastra
Notes:
- For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main
trackastrapackage. - On Windows currently only supported for Python 3.10.
Usage
trackastraexpects a timeseries of raw images and corresponding segmentations masks as input.- We provide some demo data at
File > Open Sample > trackastra. - Tracked cells can be directly saved in
- Results can be drag-and-dropped back into napari for inspection.
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