Project description

napari-trackpy

Plugin to do trackpy particle tracking on 3D microscopy data within napari. Currently only tracking of XYZ data is implemented.

You can install napari-trackpy via pip:

pip install napari-trackpy

To install latest development version :

pip install git+https://github.com/rhoitink/napari-trackpy.git

Load your XYZ data (using napari-aicsimageio)
Make sure to split channels into different layers, such that the layer only contains 3D (XYZ) data
Open the widget for the tracking plugin via Plugins > XYZ particle tracking
Optimize the tracking settings for your dataset, for an extensive description of the settings, visit this tutorial
Save your tracking data into the .xyz file format using Ctrl+S (on the points layer) or via the menu File > Save Selected Layer(s)...

Contributions are very welcome. Tests can be run with tox.

Distributed under the terms of the MIT license, "napari-trackpy" is free and open source software

If you encounter any problems, please file an issue along with a detailed description.

These details have not been verified by PyPI

This version

0.3.0

Nov 9, 2023

0.2.1

Nov 8, 2023

0.2.0

Nov 7, 2023

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Uploaded Nov 9, 2023 Source

Uploaded Nov 9, 2023 Python 3

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