napari-trackpy
Plugin to do trackpy particle tracking on 3D microscopy data within napari. Currently only tracking of XYZ data is implemented.
Installation
You can install napari-trackpy via pip:
pip install napari-trackpy
To install latest development version :
pip install git+https://github.com/rhoitink/napari-trackpy.git
How to use this plugin?
- Load your XYZ data (using napari-aicsimageio)
- Make sure to split channels into different layers, such that the layer only contains 3D (XYZ) data
- Open the widget for the tracking plugin via
Plugins>XYZ particle tracking - Optimize the tracking settings for your dataset, for an extensive description of the settings, visit this tutorial
- Save your tracking data into the
.xyzfile format usingCtrl+S(on the points layer) or via the menuFile>Save Selected Layer(s)...
Contributing
Contributions are very welcome. Tests can be run with tox.
License
Distributed under the terms of the MIT license, "napari-trackpy" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
1 maintainer
Metadata
1 maintainer
Release files for napari-trackpy 0.3.0
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| File | Size | Uploaded | Provenance | Actions |
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| napari-trackpy-0.3.0.tar.gz | 12.2 kB | Without provenance | Details for napari-trackpy-0.3.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| napari_trackpy-0.3.0-py3-none-any.whl | Python 3 | none | any | Details for napari_trackpy-0.3.0-py3-none-any.whl |
Total release size: 20.6 kB
Release files / napari-trackpy-0.3.0.tar.gz
| Download URL | napari-trackpy-0.3.0.tar.gz |
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| Size | 12.2 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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| Download URL | napari_trackpy-0.3.0-py3-none-any.whl |
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| Size | 8.4 kB |
| Tags | Python 3 |
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