npc_shields
Tools for Neuropixels probe insertion into SHIELD implants: providing suggested targets, recording actual insertions, storing notes.
Insertion record widget
The main purpose of this repository is to provide a notebook widget for recording the locations of probe insertions during an ecephys experiment:
Creating new implant drawings
export 2D view of 3D model
- get a .sldpart CAD model from MPE
- open in Solidworks
- rotate the view to face the top of the implant, matching the view from the rig scope
- Save As -> .dxf
- check "current" view only
edit 2D drawing for widget
- open a copy of one of the existing .svg drawings in Inkscape/Illustrator, to use the same page size and colors
- add the new .dxf file
- if the lines are too thick to see any detail, change them to 1pt for now
- resize the new drawing to fill the page, like the existing drawing
- with the two drawings side by side, update the new drawing to match:
- the outline is fragmented and needs to be joined together so a white fill can be applied
- holes that have straight edges will need joining to be fill-able
- circular holes should already be fill-able
- check the CAD model for probe-letter designations (A1, A2, B1, ...)
- when finished, export as .svg
Metadata
Release files for npc_shields 0.1.15
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| npc_shields-0.1.15.tar.gz | 289.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| npc_shields-0.1.15-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 583.5 kB
Release files / npc_shields-0.1.15.tar.gz
| Download URL | npc_shields-0.1.15.tar.gz |
|---|---|
| Size | 289.1 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / npc_shields-0.1.15-py3-none-any.whl
| Download URL | npc_shields-0.1.15-py3-none-any.whl |
|---|---|
| Size | 294.4 kB |
| Tags | Python 3 |
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