42 projects
nwb-mcp-server
An MCP server for accessing NWB (Neurodata Without Borders) files, providing AI agents with easy access to neuroscience data.
polars-vec-ops
None
lazynwb
An attempt to speed-up access to large NWB (Neurodata Without Borders) files stored in the cloud.
npc-ephys
Tools for accessing and processing raw ephys data, compatible with data in the cloud.
npc_sessions
NWB-conversion for behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
npc-sync
Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.
npc-stim
Tools for accessing and processing stim data, compatible with data in the cloud.
DynamicRoutingTask
None
npc-mvr
Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.
np-workflows
Ecephys and behavior workflows for the Mindscope Neuropixels team.
npc_lims
Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.
np-config
Config fetching from file or Zookeeper - with local backup - repackaging code from AIBS mpeconfig.
np-logging
Pre-configured file, web, and email logging for Mindscope neuropixels projects, repackaging code from AIBS mpeconfig.
npc_shields
Tools for Neuropixels probe insertion: providing suggested targets, recording actual insertions, storing notes.
np-notebooks-launcher
A tool to launch JupyterLab with a modified version of a notebook, based on user-specified parameters.
uv-task-runner
A simple utility to run multiple Python scripts sequentially or in parallel, with isolated environments, monitoring and error handling.
domesday
A shared knowledge base that keeps AI tools informed of your team's project-specific information.
domesday-book
Redirect to the `domesday` project.
np_codeocean
Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
npc_session
Basic tools for parsing subject, session, date and time associated with data from the Mindscope Neuropixels team, in the cloud.
np-services
Tools for interfacing with devices and services used in Mindscope Neuropixels experiments at the Allen Institute.
aind-session
User-friendly tools for accessing paths, metadata and assets related to AIND sessions.
auto-app-panel
Automatically generate a Code Ocean App Panel from an argument parser defined in code.
np_queuey
Tools for submitting and processing jobs through a message queue for Mindscope Neuropixels workflows.
npc-samstim
Tools for processing stim data from Sam's DynamicRoutingTask, compatible with data in the cloud.
np-pipeline-qc
Analysis and visualization code for quality-control of Neuropixels pipeline data.
npc-io
File IO tools for MindScope Neuropixels projects in the cloud.
np-session
Tools for accessing data, metadata, and jobs related to ecephys and behavior sessions for the Mindscope Neuropixels team.
hdmf_zarr_bjh
A package defining a Zarr I/O backend for HDMF - forked to fix a bug
np-tools
General-purpose tools for common tasks encountered in Mindscope Neuropixels workflows.
ndx-dynamic-routing-metadata
Type to store metadata for dynamic routing experiments at Allen Institute
npc-utils
Collection of MindScope Neuropixels packages, simplifying installation and keeping versions updated.
np_probe_targets
Tools for Neuropixels probe insertion: providing suggested targets, recording actual insertions, storing notes.
np-jobs
Interfaces for job queues used to coordinate distributed tasks for Mindscope Neuropixels workflows.
pydbhub-bjh
pydbhub
np-nwb
Tools for quickly generating `.nwb` files from non-standard Mindscope Neuropixels experiments.
np-eyetracking
Tools for generating eye-tracking data for .nwb creation.
np-vba
Python package for analyzing behavioral data for Brain Observatory: Visual Behavior. Forked to specify dependencies in pyproject.toml and support Python >3.7.
np-envs
Config and scripts for managing virtual envs for Mindscope Neuropixels projects.
np-zro
Just the `zro.Proxy` class extracted from `mpeconfig`, with `zmq` as a dependency.
np-audio-control
Tools for remote control of Windows system audio on Mindscope Neuropixels and Behavior rigs.
np-datajoint
Tools for spike-sorting Mindscope neuropixels ecephys sessions on DataJoint, retrieving results and comparing with locally-sorted equivalents.
