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Palmari provides a plugin to analyze PALM movies, as well as microscope recordings of other SMLM-based SPT modalities. Set up your pipeline on one file, run it on a folder !

Project description


Documentation Status Python Version tests napari hub License

A processing pipeline for PALM movies analysis (pre-processing, localization, drift correction, tracking).

Check out the documentation to get started.


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.


You can install palmari via pip:

pip install palmari

To install latest development version :

pip install git+


Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


Distributed under the terms of the CeCILL license.


If you encounter any problems, please file an issue along with a detailed description.

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