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perGENIE is a Web/CUI application for personal genome interpretation.

Project description

perGENIE is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.

travis Latest version on PyPI License on PyPI

Quick Start (For non-developers)

Without installation, just download this repository and run:

$ python ./pergenie [command] [options]

Usage Examples

To run Disease Risk Report:

$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
                               -F vcf_whole_genome \
                               -P Asian

For developpers

How to Install

If you are familier with pip:

$ pip install pergenie

Or clone this repository, then, install by setup script:

$ python install

How to run test

$ python test


Copyright (c) 2012,2013,2014,2015 perGENIE Team <knmkr3gma[at]>

perGENIE is licensed under the GNU AGPLv3.0.



  • 0.1.0 - Initial release
  • 0.1.1 - Update readme
  • 0.1.2 - Change license to AGPLv3
  • 0.1.3 - Rewrite to .rst

Project details

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