Skip to main content

perGENIE is a Web/CUI application for personal genome interpretation.

Project description

perGENIE is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.

travis Latest version on PyPI License on PyPI

Quick Start (For non-developers)

Without installation, just download this repository and run:

$ python ./pergenie [command] [options]

Usage Examples

To run Disease Risk Report:

$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
                               -F vcf_whole_genome \
                               -P Asian

For developpers

How to Install

If you are familier with pip:

$ pip install pergenie

Or clone this repository, then, install by setup script:

$ python setup.py install

How to run test

$ python setup.py test

License

Copyright (c) 2012,2013,2014,2015 perGENIE Team <knmkr3gma[at]gmail.com>

perGENIE is licensed under the GNU AGPLv3.0.

AGPLv3

CHANGELOG

  • 0.1.0 - Initial release
  • 0.1.1 - Update readme
  • 0.1.2 - Change license to AGPLv3
  • 0.1.3 - Rewrite README.md to .rst

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for pergenie, version 0.1.4
Filename, size File type Python version Upload date Hashes
Filename, size pergenie-0.1.4.tar.gz (11.3 MB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page