Pipemake: A pipeline creation tool using Snakemake
Project description
pipemake
pipemake is a lightweight, flexible, and easy-to-use tool for creating and managing Snakemake pipelines. It was designed with three primary goals:
Offer a collection of curated, customizable genomic analysis pipelines for researchers seeking to rapidly integrate Snakemake-based workflows into their research.
Optimize computational efficiency and reproducibility by fully operating in the Snakemake ecosystem.
Streamline development by creating a flexible platform with swappable pipelines that easily reuse previously written Snakemake code.
Getting pipemake
mamba
mamba create -c conda-forge -c bioconda -c kocherlab -n pipemake pipemakeIssues
Check the docs.
Search the issues on GitHub or open a new one.
License
Pipemake is licensed under the MIT license. See the LICENSE file for details.
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