Plasmid binning benchmark.
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Project description
Plasmid binning benchmark manager
Install
Requires:
slurmbashpython 3.13
Python environments
With virtualenv
python3.13 -m virtualenv .venv_slurmbench_313
source ./.venv_slurmbench_313/bin/activate # activate.fish for fish shell...
pip install . # `pip install -e .` for editable mode i.e. for dev
With uv
uv sync
# For Bash:
source .venv/bin/activate
# For Fish:
source .venv/bin/activate.fish
Usage
plmbench --help
Create automatic documentation
plmbench doc auto # creates autodoc in `docs` directory
plmbench doc clean # to clean the auto documentation
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