Plasmid binning benchmark manager
Install
Requires:
slurmbashpython 3.13
Python environments
With virtualenv
python3.13 -m virtualenv .venv_slurmbench_313
source ./.venv_slurmbench_313/bin/activate # activate.fish for fish shell...
pip install . # `pip install -e .` for editable mode i.e. for dev
With uv
uv sync
# For Bash:
source .venv/bin/activate
# For Fish:
source .venv/bin/activate.fish
Usage
plmbench --help
Create automatic documentation
plmbench doc auto # creates autodoc in `docs` directory
plmbench doc clean # to clean the auto documentation
1 maintainer
Release files for plasmid-bin-bench 0.0.10
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| plasmid_bin_bench-0.0.10.tar.gz | 38.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| plasmid_bin_bench-0.0.10-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 87.6 kB
Release files / plasmid_bin_bench-0.0.10.tar.gz
| Download URL | plasmid_bin_bench-0.0.10.tar.gz |
|---|---|
| Size | 38.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.9.24 {"installer":{"name":"uv","version":"0.9.24","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Debian GNU/Linux","version":"12","id":"bookworm","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
Release files / plasmid_bin_bench-0.0.10-py3-none-any.whl
| Download URL | plasmid_bin_bench-0.0.10-py3-none-any.whl |
|---|---|
| Size | 49.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.9.24 {"installer":{"name":"uv","version":"0.9.24","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Debian GNU/Linux","version":"12","id":"bookworm","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
