Plasmid binning benchmark.
Project description
Plasmid binning benchmark manager
Install
Requires:
slurmbashpython 3.13
Python environments
With conda
-
[For dev] Create the conda environment
conda env create -n plmbench-dev -f config/condaenv_313-dev.yml
-
[For dev] Activate the conda environment
conda activate plmbench-dev
With virtualenv
python3.13 -m virtualenv .venv_plmbench_313
source ./.venv_plmbench_313/bin/activate # active.fish for fish shell...
pip install . # `pip install -e .` for editable mode i.e. for dev
Usage
plmbench --help
Create automatic documentation
plmbench doc auto # creates autodoc in `docs` directory
plmbench doc clean # to clean the auto documentation
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
plasmid_bin_bench-0.0.4.tar.gz
(53.0 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file plasmid_bin_bench-0.0.4.tar.gz.
File metadata
- Download URL: plasmid_bin_bench-0.0.4.tar.gz
- Upload date:
- Size: 53.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.13.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
e74a864d787b74d884d64a62144db9d5c303cd1b2f8833c2dc9cafa27ff80a75
|
|
| MD5 |
345aff394b60c9bd945ea596edc429be
|
|
| BLAKE2b-256 |
6cb2f5efd46afbb01a8a1ee36e327a98be5d1f07c1ebe1c2294de8277e2e3773
|
File details
Details for the file plasmid_bin_bench-0.0.4-py3-none-any.whl.
File metadata
- Download URL: plasmid_bin_bench-0.0.4-py3-none-any.whl
- Upload date:
- Size: 59.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.13.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
faacf46c7d82140feec06d12e550e7754acc4301445db57d6b374b86d51a132f
|
|
| MD5 |
cb5ce5b8b9d14e24199951b8c0776070
|
|
| BLAKE2b-256 |
ad76f1aedd09ee87bf235784fb7791b7152ab64c894a015f8b0935018e4be4d7
|
