Plasmid binning benchmark.
Project description
Plasmid binning benchmark manager
Install
Requires:
slurmbashpython 3.13
Python environments
With conda
-
[For dev] Create the conda environment
conda env create -n plmbench-dev -f config/condaenv_313-dev.yml
-
[For dev] Activate the conda environment
conda activate plmbench-dev
With virtualenv
python3.13 -m virtualenv .venv_plmbench_313
source ./.venv_plmbench_313/bin/activate # active.fish for fish shell...
pip install . # `pip install -e .` for editable mode i.e. for dev
Usage
plmbench --help
Create automatic documentation
plmbench doc auto # creates autodoc in `docs` directory
plmbench doc clean # to clean the auto documentation
Release history Release notifications | RSS feed
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