proGenomes-cli
proGenomes-cli is a command-line tool for exploring the proGenomes dataset of bacterial and archaeal genomes.
If you use this software in a publication please cite:
Anthony Fullam, Ivica Letunic, Oleksandr M Maistrenko, Alexandre Areias Castro, Luis Pedro Coelho, Anastasiia Grekova, Christian Schudoma, Supriya Khedkar, Mahdi Robbani, Michael Kuhn, Thomas S B Schmidt, Peer Bork, Daniel R Mende, proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomes, Nucleic Acids Research, 2025;, gkaf1208, https://doi.org/10.1093/nar/gkaf1208
Installation
proGenomes-cli can be installed using pip:
pip install progenomes
or using conda through the bioconda channel:
conda install -c bioconda progenomes
Usage
After installation, the progenomes command provides access to several subcommands:
progenomes download <options> # Download genome data
progenomes view <options> # Inspect downloaded data
Refer to the built-in help for full details on available commands.
progenomes --help
License
This project is licensed under the MIT License.
1 maintainer
Metadata
1 maintainer
Release files for proGenomes 0.3.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| progenomes-0.3.0.tar.gz | 7.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| progenomes-0.3.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 16.3 kB
Release files / progenomes-0.3.0.tar.gz
| Download URL | progenomes-0.3.0.tar.gz |
|---|---|
| Size | 7.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/5.1.0 CPython/3.11.9
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Release files / progenomes-0.3.0-py3-none-any.whl
| Download URL | progenomes-0.3.0-py3-none-any.whl |
|---|---|
| Size | 9.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.0 CPython/3.11.9
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