A proGenomes command-line tool for interacting with bacterial and archeal genomes.
Project description
proGenomes-cli
proGenomes-cli is a command-line tool for exploring the proGenomes dataset of bacterial and archaeal genomes.
If you use this software in a publication please cite:
Fullam, Anthony; Letunic, Ivica,; Maistrenko, Oleksandr; Castro, Alexandre A; Coelho, Luis Pedro; Grekova, Anastasia ; Schudoma, Christian; Khedkar, Supriya; Robbani, Shahriyar Mahdi; Kuhn, Michael; Schmidt, Thomas S. B; Bork, Peer; Mende, Daniel R. proGenomes4: providing two million accurately and consistently annotated high-quality prokaryotic genomes. in Nucleic Acids Research. (accepted)
Installation
Clone this repository and install using pip:
pip install .
Usage
After installation, the progenomes command provides access to several subcommands:
progenomes download <options> # Download genome data
progenomes view <options> # Inspect downloaded data
Refer to the built-in help for full details on available commands.
progenomes --help
License
This project is licensed under the MIT License.
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