pydbsnp
Interface with dbSNP VCF data
Installation
First install the python package via pip3
pip3 install pydbsnp
or
pip3 install --user pydbsnp
Once the python package is installed, download and index the dbSBP VCF data:
pydbsnp-download
pydbsnp-index
For hg19/GRCh37 coordinates:
pydbsnp-download --reference-build GRCh37
pydbsnp-index
Command line usage
pydbsnp-query -h
pydbsnp-query rs689
pydbsnp-query --reference-build GRCh37 rs689
1 maintainer
Release files for pydbsnp 0.0.13
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pydbsnp-0.0.13.tar.gz | 3.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pydbsnp-0.0.13-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 9.9 kB
Release files / pydbsnp-0.0.13.tar.gz
| Download URL | pydbsnp-0.0.13.tar.gz |
|---|---|
| Size | 3.7 kB |
| Tags | Source |
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Release files / pydbsnp-0.0.13-py3-none-any.whl
| Download URL | pydbsnp-0.0.13-py3-none-any.whl |
|---|---|
| Size | 6.1 kB |
| Tags | Python 3 |
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twine/1.12.1 pkginfo/1.5.0.1 requests/2.21.0 setuptools/41.0.1 requests-toolbelt/0.8.0 tqdm/4.29.1 CPython/3.6.5
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