pydbsnp

Interface with dbSNP VCF data

Installation

First install the python package via pip3

pip3 install pydbsnp

or

pip3 install --user pydbsnp

Once the python package is installed, download and index the dbSBP VCF data:

pydbsnp-download
pydbsnp-index

For hg19/GRCh37 coordinates:

pydbsnp-download --reference-build GRCh37
pydbsnp-index

Command line usage

pydbsnp-query -h

pydbsnp-query rs689
pydbsnp-query --reference-build GRCh37 rs689

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (2.0.2)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for anthony-aylward from gravatar.com anthony-aylward

Credits

Author: Anthony Aylward

License

MIT License

Classifiers

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Release history Release notifications | RSS feed

2.0.2

2 files

2.0.1

2 files

2.0.0

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1.0.0

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0.1.14

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0.1.13

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0.1.12

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0.1.11

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0.1.10

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0.1.9

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0.1.1

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0.1.0

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0.0.18

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0.0.17

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0.0.15

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0.0.14

2 files

This release

0.0.13 This release

2 files

0.0.12

2 files

0.0.11

2 files

0.0.10

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0.0.9

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0.0.8

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0.0.7

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0.0.6

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0.0.4

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0.0.3

2 files

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