pydbsnp
Interface with dbSNP VCF data
Installation
First install the python package via pip3
pip3 install pydbsnp
or
pip3 install --user pydbsnp
Once the python package is installed, download and index the dbSBP VCF data:
pydbsnp-download
pydbsnp-index
For hg19/GRCh37 coordinates:
pydbsnp-download --reference-build GRCh37
pydbsnp-index
Command line usage
pydbsnp-query -h
pydbsnp-query rs689
pydbsnp-query --reference-build GRCh37 rs689
1 maintainer
Metadata
1 maintainer
Release files for pydbsnp 0.0.13
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
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| pydbsnp-0.0.13.tar.gz | 3.7 kB | Without provenance | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pydbsnp-0.0.13-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 9.9 kB
Release files / pydbsnp-0.0.13.tar.gz
| Download URL | pydbsnp-0.0.13.tar.gz |
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| Size | 3.7 kB |
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Release files / pydbsnp-0.0.13-py3-none-any.whl
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| Tags | Python 3 |
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