Interface with dbSNP VCF data
Project description
pydbsnp
Interface with dbSNP VCF data
Installation
First install the python package via pip3
pip3 install pydbsnp
or
pip3 install --user pydbsnp
Once the python package is installed, download and index the dbSBP VCF data:
pydbsnp-download
pydbsnp-index
For hg19/GRCh37 coordinates:
pydbsnp-download --reference-build GRCh37
pydbsnp-index
Command line usage
pydbsnp-query -h
pydbsnp-query rs689
pydbsnp-query --reference-build GRCh37 rs689
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