Pydra compose package for wrapping BIDS Apps in Pydra tasks
Project description
Pydra-compose-bidsapp plugin
Pydra-compose-bidsapp is a plugin package for the Pydra dataflow engine, which adds the feature to wrap up BIDS Apps into Pydra task classes that take input files, stores them in a BIDS dataset created on the fly, runs the BIDS App on them, then extracts the files into the tasks outputs. It can be useful when running BIDS app on non-BIDS structured data (e.g. XNAT or LORIS repositories).
For developers
Install repo in developer mode from the source directory. It is also useful to install pre-commit to take care of styling via black:
python3 -m pip install -e '.[dev]'
pre-commit install
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