Skip to main content

Pydra compose package for wrapping BIDS Apps in Pydra tasks

Project description

Pydra-compose-bidsapp plugin

Pydra-compose-bidsapp is a plugin package for the Pydra dataflow engine, which adds the feature to wrap up BIDS Apps into Pydra task classes that take input files, stores them in a BIDS dataset created on the fly, runs the BIDS App on them, then extracts the files into the tasks outputs. It can be useful when running BIDS app on non-BIDS structured data (e.g. XNAT or LORIS repositories).

For developers

Install repo in developer mode from the source directory. It is also useful to install pre-commit to take care of styling via black:

python3 -m pip install -e '.[dev]'
pre-commit install

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pydra_compose_bidsapp-0.1.1.tar.gz (3.9 MB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

pydra_compose_bidsapp-0.1.1-py3-none-any.whl (12.0 kB view details)

Uploaded Python 3

File details

Details for the file pydra_compose_bidsapp-0.1.1.tar.gz.

File metadata

  • Download URL: pydra_compose_bidsapp-0.1.1.tar.gz
  • Upload date:
  • Size: 3.9 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.11.7

File hashes

Hashes for pydra_compose_bidsapp-0.1.1.tar.gz
Algorithm Hash digest
SHA256 6c3124ef28b68cb131c75a2120142906f881532a1354413888ea9a3e4035d0ed
MD5 8d34e6c6ad6deb26ff05794c66f959b7
BLAKE2b-256 f6b4ad6b862e7ae781cc62ec9ba6c6d5081243e2155055369487e8f3224f25f6

See more details on using hashes here.

File details

Details for the file pydra_compose_bidsapp-0.1.1-py3-none-any.whl.

File metadata

File hashes

Hashes for pydra_compose_bidsapp-0.1.1-py3-none-any.whl
Algorithm Hash digest
SHA256 44dfb73135a6240657c4d134abae2aa5b275c15a6ff7fd12a8cb9bae5c8e19dd
MD5 93cae10b523584af62dadcd34cbc1e8e
BLAKE2b-256 5b14403942c09bf96c321f9d258476365c1fa011c612b59922b4380c5ab51f34

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page