Bootstrap particle filter for epidemic forecasting
Project description
Description
This package implements a bootstrap particle filter, intended for use with mechanistic infection models to generate forecasts for epidemic outbreaks.
Documentation
The documentation is available online and can be built locally with sphinx:
python setup.py build_sphinx
Note that the sphinx_rtd_theme theme must be installed.
License
The code is distributed under the terms of the BSD 3-Clause license (see LICENSE), and the documentation is distributed under the terms of the Creative Commons BY-SA 4.0 license.
Installation
Clone this repository and execute:
python setup.py install
If you don’t have admin rights, install the package locally:
python setup.py install --user
Dependencies
This package requires h5py 2.2 or newer, NumPy 1.8 or newer, and SciPy 0.11 or newer.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distributions
Built Distribution
Hashes for pypfilt-0.5.4-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 770820893abb00604ab1abb8c366d2159d3cf56fd8e791c89fc35de0d96a2891 |
|
MD5 | 6785b2a94ee46c936404a4d005a81d3e |
|
BLAKE2b-256 | c89ef6c82181e3105cd058dbc23513131180ea6e747693309d629a3816d50258 |