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Tool for query and parsing the phenomizer tool

Project description

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query_phenomizer

A small module for querying the phenomizer tool with HPO-terms.

INFO!!!

From 16/2-16 phenomizer demands a password and username when using the service in this way. Request login credentials from sebastian.koehler@charite.de

Installation

pip install query_phenomizer

or

git clone https://github.com/moonso/query_phenomizer.git
cd query_phenomizer
pip install --editable .

##Usage##

query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt

User can check if hpo terms exist by using the flag -c/--check_terms.

query_phenomizer HP:0001623 HP:02345555 --check_terms -v

Prints that HP:02345555 does not exist.

For more info run

query_phenomizer --help

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