rapids-singlecell: GPU-Accelerated Single-Cell Analysis within scverse®
rapids-singlecell provides GPU-accelerated single-cell analysis with an AnnData-first API. It is largely compatible with Scanpy and includes selected functionality from Squidpy, decoupler, and pertpy. Computations use CuPy and NVIDIA RAPIDS for performance on large datasets.
- GPU acceleration: Common single-cell workflows on
AnnDatarun on the GPU. - Ecosystem compatibility: Works with Scanpy APIs; includes pieces from Squidpy, decoupler, and pertpy.
- Simple installation: Available via Conda and PyPI.
Documentation
For more information please have a look through the documentation
Citation
If you use this tool, please cite:
Please cite the relevant tools if used: decoupler for decoupler functions, squidpy for spatial analysis, and pertpy for perturbation analysis.
rapids-singlecell is part of the scverse® project (website, governance) and is fiscally sponsored by NumFOCUS. If you like scverse® and want to support our mission, please consider making a tax-deductible donation to help the project pay for developer time, professional services, travel, workshops, and a variety of other needs.
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file rapids_singlecell-0.16.0.tar.gz.
File metadata
- Download URL: rapids_singlecell-0.16.0.tar.gz
- Upload date:
- Size: 2.2 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
ee61fba79a584a9495e8275c197f8ddcc8e614043735bda6d363b0cfd4347b45
|
|
| MD5 |
e4fabe355bd4559e0391092b3f501f0d
|
|
| BLAKE2b-256 |
ec68d1ba7e4023508fb3e0be7b62a53525079d3f3caf81e650e5df17368821eb
|
Provenance
The following attestation bundles were made for rapids_singlecell-0.16.0.tar.gz:
Publisher:
publish.yml on scverse/rapids-singlecell
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
rapids_singlecell-0.16.0.tar.gz -
Subject digest:
ee61fba79a584a9495e8275c197f8ddcc8e614043735bda6d363b0cfd4347b45 - Sigstore transparency entry: 2186913685
- Sigstore integration time:
-
Permalink:
scverse/rapids-singlecell@776b84387c759c66f75865c4fb3357446b2be8a6 -
Branch / Tag:
refs/tags/v0.16.0 - Owner: https://github.com/scverse
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish.yml@776b84387c759c66f75865c4fb3357446b2be8a6 -
Trigger Event:
release
-
Statement type:
