sbmlsim are utilities for the simulation of SBML models.
Project description
sbmlsim: SBML simulation made easy
sbmlsim is a collection of python utilities to simplify simulations with SBML models implemented on top of roadrunner. Source code is available from https://github.com/matthiaskoenig/sbmlsim.
Features include among others
- simulation experiments
- simulation reports
- parameter fitting
- sensitivity analysis
If you have any questions or issues please open an issue.
Installation
sbmlutils is available from pypi and can be installed via
pip install sbmlsim
Develop version
The latest develop version can be installed via
pip install git+https://github.com/matthiaskoenig/sbmlsim.git@develop
How to cite
License
- Source Code: MIT
- Documentation: CC BY-SA 4.0
Funding
Matthias König is supported and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 "QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).
Matthias König was supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054).
© 2019-2026 Matthias König
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file sbmlsim-0.3.0.tar.gz.
File metadata
- Download URL: sbmlsim-0.3.0.tar.gz
- Upload date:
- Size: 10.2 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
c466d1d125950f411ec8c73565361e28e1d9d7f0b4bee2fa2300477bedf13ad6
|
|
| MD5 |
1418c0f86b503795a0c5eb68978d2911
|
|
| BLAKE2b-256 |
16332713e522a2616fce582cd996bc7ba76221041fb15bbb5b95c85751cdbb07
|
Provenance
The following attestation bundles were made for sbmlsim-0.3.0.tar.gz:
Publisher:
main.yml on matthiaskoenig/sbmlsim
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
sbmlsim-0.3.0.tar.gz -
Subject digest:
c466d1d125950f411ec8c73565361e28e1d9d7f0b4bee2fa2300477bedf13ad6 - Sigstore transparency entry: 872399968
- Sigstore integration time:
-
Permalink:
matthiaskoenig/sbmlsim@295b40850895f35b848232bb43106cb965542de2 -
Branch / Tag:
refs/tags/0.3.0 - Owner: https://github.com/matthiaskoenig
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
main.yml@295b40850895f35b848232bb43106cb965542de2 -
Trigger Event:
push
-
Statement type:
File details
Details for the file sbmlsim-0.3.0-py3-none-any.whl.
File metadata
- Download URL: sbmlsim-0.3.0-py3-none-any.whl
- Upload date:
- Size: 2.4 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
5d205b2325246e02f0ca95a3486cf1bcf413ac97211fe4effde796fecbae3b31
|
|
| MD5 |
715aba258be34a1d81ed0620bb9fc635
|
|
| BLAKE2b-256 |
66a5dd41e5f792808e0b653370317026987815de7edff091bf38602971cf37e0
|
Provenance
The following attestation bundles were made for sbmlsim-0.3.0-py3-none-any.whl:
Publisher:
main.yml on matthiaskoenig/sbmlsim
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
sbmlsim-0.3.0-py3-none-any.whl -
Subject digest:
5d205b2325246e02f0ca95a3486cf1bcf413ac97211fe4effde796fecbae3b31 - Sigstore transparency entry: 872400042
- Sigstore integration time:
-
Permalink:
matthiaskoenig/sbmlsim@295b40850895f35b848232bb43106cb965542de2 -
Branch / Tag:
refs/tags/0.3.0 - Owner: https://github.com/matthiaskoenig
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
main.yml@295b40850895f35b848232bb43106cb965542de2 -
Trigger Event:
push
-
Statement type:
