Plugin to use Locscale program within the Scipion framework
Project description
This plugin provide wrappers around LocScale program for local sharpening of cryo-EM density maps.
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-locscale
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-locscale.git
install
scipion installp -p path_to_scipion-em-locscale --devel
LocScale sources will be downloaded automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/locscale-0.1, if you want to change it, set LOCSCALE_HOME in scipion.conf file to the folder where the LocScale is installed. LocScale uses EMAN2 libraries, so you need to provide existing EMAN2 installation path by setting EMAN2_HOME variable (default eman-2.3) in the config file.
Note: mpi4py will be installed in the Eman’s python
To check the installation, simply run the following Scipion tests:
scipion test locscale.tests.test_protocol_locscale.TestProtLocscale
A complete list of tests can also be seen by executing scipion test --show --grep locscale
Supported versions
0.1
Protocols
local sharpening
References
Jakobi A. et al., eLife, 2017
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for scipion-em-locscale-3.0.3.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 606eef0d2c50e406ee0bf1d3e30b342117dd0fe63d5ca62fcd6e41f867ef9da5 |
|
MD5 | c7d4925c65face012be0e3b1fe9c1345 |
|
BLAKE2b-256 | 2ff250bb363bb6e3d72946fe8e4e9115262a74c0db1c65b0d292fe45fadace55 |
Hashes for scipion_em_locscale-3.0.3-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | d2f1f1a809a9fb4b4e8bddc1819b5b5442af0df0af3c696eda5faf228202dd1f |
|
MD5 | c6ee034e89c462fe5166553f5f6591e2 |
|
BLAKE2b-256 | e0c228b8e9726fdf0b5848e192d500984c802b7136d31ded8209b2ed6ba07809 |