Installs scipion 3 creating a virtual environment fot it
Project description
pwem is a Python module of Scipion framework for image processing in Electron Microscopy
The entire collection is licensed under the terms of the GNU Public License, version 3 (GPLv3).
Development
To install pwem for development purposes, one can do:
# Create a clean virtual environment python -m venv ~/myenv source ~/myenv/bin/activate git clone git@github.com:scipion-em/scipion-em.git cd scipion-em python -m pip install -e . # Install in the environment as development
Running tests
First make sure that pwem is available as a Python module in your current Python environment. During development, I tend to set the PYTHONPATH:
cd scipion-em # Either you have installed as mentioned above, or modify the PYTHONPATH export PYTHONPATH=$PYTHONPATH:$PWD # After pyworkflow is accesible as a module, then: cd pwem/tests python -m unittest discover
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