Installs scipion 3 creating a virtual environment for it, for now only for developers.
Project description
Scipion installer
Scipion installer is a python module to install scipion 3 (already in alfa) and not ready for production.
This installer is python2 python3 compatible and is a very lightweight package. It will create a virtual environment (conda or virtualenv) with scipion in it.
The entire collection is licensed under the terms of the GNU Public License, version 3 (GPLv3).
Install
python3 -m pip install scipion-installer
installscipion where-to-install-scipion
NOTE: Installer works for python2 as well or using pip or pip3, so following commands should work
python2 -m pip install scipion-installer
pip install scipion-installer
pip3 install scipion-installer
Advanced options
installscipion [-h] [-conda] [-dev] [-noXmipp] [-j J] [-dry]
[-httpsClone] [-noAsk] [-n N]
path
positional arguments:
path Location where you want scipion to be installed.
optional arguments:
-h, --help show this help message and exit
-conda Use conda, otherwise it will use virtualenv
-dev installs components in devel mode
-noXmipp Xmipp is installed by default. This flag skips the Xmipp installation.
-j J Number of processors to compile Xmipp. The more the beeter ...
-dry Just shows the commands without running them.
-httpsClone Only when -dev is active, makes git clones using https instead
of ssh
-noAsk try to install scipion ignoring some control questions in the
process.
-n N Name of the virtual environment. By default, if this parameter
is not passed, the name will be .scipion3env
Troubleshooting
pip/pip3 is needed to get the installer. For ubuntu/debian you might need root access to run
sudo apt-get install python-pip
No root access?: You can try pip install –user scipion-installer to install it locally
Missing dependencies: scipion needs python3-tkinter to work and an existing python3 installation. For ubuntu/debian you might need root access to run
sudo apt-get install python3-tk
If Error: “pkg_resources.DistributionNotFound: The ‘zipp>=0.5’ is raised when launching installscipion, try to install zipp by
pip install zipp
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