High-level helpers for PubMed search, metadata & full-text retrieval.

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  • License: Apache Software License (Apache License)
  • Tags PubMed , OHDSI , Epidemiology , Literature
  • Requires: Python >=3.9
  • Provides-Extra: dev
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Project description

searchpubmed

A Python package for searching PubMed and retrieving article metadata via the NCBI E-utilities (ESearch, ESummary, EFetch, ELink).

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Features

  • Perform complex PubMed searches with boolean operators
  • Batch retrieval of PubMed IDs (PMID) and conversion to PMCIDs
  • Fetch detailed article metadata (title, abstract, authors, journal, publication date)
  • Configurable rate-limiting to comply with NCBI usage policies
  • Returns results as pandas DataFrames for seamless analysis

License

This project is licensed under the Apache License 2.0. See the LICENSE file for details.

Project details

Verified details

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Avatar for gowthamrao from gravatar.com gowthamrao
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  • License: Apache Software License (Apache License)
  • Tags PubMed , OHDSI , Epidemiology , Literature
  • Requires: Python >=3.9
  • Provides-Extra: dev
Classifiers

Release history Release notifications | RSS feed

0.5.4

0.5.3

0.5.2

0.5.1

0.5.0

0.4.4

0.4.3

0.4.2

0.4.0

0.3.9

0.3.8

0.3.6

0.3.5

0.3.4

0.3.3

0.3.1

0.3.0

0.2.6

0.2.4

This version

0.2.3

0.2.1

0.2.0

0.1.0

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  • Tags: Python 3
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