High-level helpers for PubMed search, metadata & full-text retrieval.

Navigation

Verified details

These details have been verified by PyPI
Project links
GitHub Statistics
Maintainers
Avatar for gowthamrao from gravatar.com gowthamrao
Meta

Unverified details

These details have not been verified by PyPI
Meta
  • License: Apache Software License (Apache License)
  • Tags PubMed , OHDSI , Epidemiology , Literature
  • Requires: Python >=3.9
  • Provides-Extra: dev
Classifiers
Report project as malware

Project description

searchpubmed

A Python package for searching PubMed and retrieving article metadata via the NCBI E-utilities (ESearch, ESummary, EFetch, ELink).

CI codecov

Features

  • Perform complex PubMed searches with boolean operators
  • Batch retrieval of PubMed IDs (PMID) and conversion to PMCIDs
  • Fetch detailed article metadata (title, abstract, authors, journal, publication date)
  • Configurable rate-limiting to comply with NCBI usage policies
  • Returns results as pandas DataFrames for seamless analysis

License

This project is licensed under the Apache License 2.0. See the LICENSE file for details.

Project details

Verified details

These details have been verified by PyPI
Project links
GitHub Statistics
Maintainers
Avatar for gowthamrao from gravatar.com gowthamrao
Meta

Unverified details

These details have not been verified by PyPI
Meta
  • License: Apache Software License (Apache License)
  • Tags PubMed , OHDSI , Epidemiology , Literature
  • Requires: Python >=3.9
  • Provides-Extra: dev
Classifiers

Release history Release notifications | RSS feed

0.5.4

0.5.3

0.5.2

0.5.1

0.5.0

0.4.4

0.4.3

0.4.2

0.4.0

0.3.9

0.3.8

0.3.6

0.3.5

0.3.4

0.3.3

0.3.1

0.3.0

This version

0.2.6

0.2.4

0.2.3

0.2.1

0.2.0

0.1.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

searchpubmed-0.2.6.tar.gz (26.8 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

searchpubmed-0.2.6-py3-none-any.whl (20.6 kB view details)

Uploaded Python 3

File details

Details for the file searchpubmed-0.2.6.tar.gz.

File metadata

  • Download URL: searchpubmed-0.2.6.tar.gz
  • Upload date:
  • Size: 26.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for searchpubmed-0.2.6.tar.gz
Algorithm Hash digest
SHA256 011327fa462e2c3c361a8c8e670abd77bf3f7db79eb8b00e4a3df97986190c54
MD5 e59849b9efba37bec512f668f05ca7ac
BLAKE2b-256 202683876037287a560184f7ba2f025b48bb92d33a409c39180ed105dda7771c

See more details on using hashes here.

Provenance

The following attestation bundles were made for searchpubmed-0.2.6.tar.gz:

Publisher: publish.yml on OHDSI/searchpubmed

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file searchpubmed-0.2.6-py3-none-any.whl.

File metadata

  • Download URL: searchpubmed-0.2.6-py3-none-any.whl
  • Upload date:
  • Size: 20.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.12.9

File hashes

Hashes for searchpubmed-0.2.6-py3-none-any.whl
Algorithm Hash digest
SHA256 3d208511c2aa3daa589174cbf7e1c7d89a8a14b15aaa429fe0320910c321491c
MD5 d1e2c4bf4c1dccd82b7d1ff36e7e9a41
BLAKE2b-256 0fdc7c7249da8ec82baba9e35fb76a7c487a4ecc7febec159d6c3589807119e4

See more details on using hashes here.

Provenance

The following attestation bundles were made for searchpubmed-0.2.6-py3-none-any.whl:

Publisher: publish.yml on OHDSI/searchpubmed

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page